Accepted Papers

(alphabetically ordered by author names)

1) Ernst Althaus, Andreas Hildebrandt and Anna Katharina Hildebrandt. A Greedy Algorithm for Hierarchical Complete Linkage Clustering
2) Liana Amaya Moreno, Ozlem Defterli, Armin Fügenschuh and Gerhard-Wilhelm Weber. Vester's Sensitivity Model for Genetic Networks with Time-Discrete Dynamics
3) Thiago Arruda, Ulisses Dias and Zanoni Dias. Heuristics for the Sorting by Length-Weighted Inversions Problem on Signed Permutations
4) Annie Chateau and Rodolphe Giroudeau. Complexity and Polynomial-Time Approximation Algorithms around the Scaffolding Problem
5) Alexander Grigoriev, Steven Kelk and Nela Lekic. On Low Treewidth Graphs and Supertrees
6) Ivo Hedtke, Ioana Lemnian, Matthias Müller-Hannemann and Ivo Grosse. On Optimal Read Trimming in Next Generation Sequencing and its Complexity
7) Bogdan Iancu, Diana-Elena Gratie, Sepinoud Azimi and Ion Petre. On the Implementation of Quantitative Model Refinement
8) Kaname Kojima, Naoki Nariai, Takahiro Mimori, Yumi Yamaguchi-Kabata, Yukuto Sato, Yosuke Kawai and Masao Nagasaki. HapMonster: a Statistically Unified Approach for Variant Calling and Haplotyping Based on Phase-informative Reads
9) Claire Lemaitre, Liviu Ciortuz and Pierre Peterlongo. Mapping-free and Assembly-free Discovery of Inversion Breakpoints from Raw NGS Reads
10) Laurent Lemarchand, Reinhardt Euler, Congping Lin and Imogen Sparkes. Modeling the Geometry of the Endoplasmic Reticulum Network
11) Sean Maxwell, Mark Chance and Mehmet Koyuturk. Efficiently Enumerating all Connected Induced Subgraphs of a Large Molecular Network
12) Giuseppe Narzisi, Bud Mishra and Michael Schatz. On Algorithmic Complexity of Biomolecular Sequence Assembly Problem
13) Carla Negri Lintzmayer and Zanoni Dias. On Sorting of Signed Permutations by Prefix and Suffix Reversals and Transpositions
14) Carla Negri Lintzmayer and Zanoni Dias. On the Diameter of Rearrangement Problems
15) Amina Noor, Aitzaz Ahmad, Bilal Wajid, Erchin Serpedin, Mohamed Nounou and Hazem Nounou. A Closed-Form Solution for Transcription Factor Activity Estimation using Network Component Analysis
16) Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Tetsuo Shibuya and Masao Nagasaki. SVEM: a Structural Variant Estimation Method using Multi-Mapped Reads on Breakpoints
17) Dimitris Polychronopoulos, Anastasia Krithara, Christoforos Nikolaou, Giorgos Paliouras, Yannis Almirantis and Giorgos Giannakopoulos. Analysis and Classification of Constrained DNA Elements with N-gram Graphs and Genomic Signatures
18) David A. Rosenblueth, Stalin Muñoz, Miguel Carrillo and Eugenio Azpeitia. Inference of Boolean Networks from Gene Interaction Graphs using a SAT Solver
19) Sebastian Wandelt and Ulf Leser. RRCA: Ultra-fast Multiple Genome Alignments
20) Inken Wohlers, Mathilde Le Boudic-Jamin, Hristo Djidjev, Gunnar Klau and Rumen Andonov. Exact Protein Structure Classification using the Maximum Contact Map Overlap Metric